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torchtree 1.0.2 documentation

Getting Started

  • Installation
  • Quick start
  • Features
  • Input files

Advanced

  • Building blocks
  • Tree likelihood model
  • Benchmark

API

  • API Reference
    • torchtree.cli
      • torchtree.cli.advi
      • torchtree.cli.argparse_utils
      • torchtree.cli.cli
      • torchtree.cli.evolution
      • torchtree.cli.hmc
      • torchtree.cli.jacobians
      • torchtree.cli.loggers
      • torchtree.cli.map
      • torchtree.cli.mcmc
      • torchtree.cli.operators
      • torchtree.cli.plugin
      • torchtree.cli.plugin_manager
      • torchtree.cli.priors
      • torchtree.cli.utils
    • torchtree.core
      • torchtree.core.abstractparameter
      • torchtree.core.classproperty_decorator
      • torchtree.core.container
      • torchtree.core.identifiable
      • torchtree.core.logger
      • torchtree.core.model
      • torchtree.core.parameter
      • torchtree.core.parameter_encoder
      • torchtree.core.parameter_utils
      • torchtree.core.parametric
      • torchtree.core.runnable
      • torchtree.core.serializable
      • torchtree.core.utils
    • torchtree.distributions
      • torchtree.distributions.bayesian_bridge
      • torchtree.distributions.ctmc_scale
      • torchtree.distributions.deterministic_normal
      • torchtree.distributions.distributions
      • torchtree.distributions.gmrf
      • torchtree.distributions.gmrf_integrated
      • torchtree.distributions.inverse_gamma
      • torchtree.distributions.joint_distribution
      • torchtree.distributions.log_normal
      • torchtree.distributions.multivariate_normal
      • torchtree.distributions.normal
      • torchtree.distributions.one_on_x
      • torchtree.distributions.scale_mixture
      • torchtree.distributions.transforms
      • torchtree.distributions.tree_prior
    • torchtree.evolution
      • torchtree.evolution.alignment
      • torchtree.evolution.attribute_pattern
      • torchtree.evolution.bdsk
      • torchtree.evolution.birth_death
      • torchtree.evolution.branch_model
      • torchtree.evolution.coalescent
      • torchtree.evolution.datatype
      • torchtree.evolution.io
      • torchtree.evolution.poisson_tree_likelihood
      • torchtree.evolution.rate_transform
      • torchtree.evolution.root_transform
      • torchtree.evolution.site_model
      • torchtree.evolution.site_pattern
      • torchtree.evolution.substitution_model
        • torchtree.evolution.substitution_model.abstract
        • torchtree.evolution.substitution_model.amino_acid
        • torchtree.evolution.substitution_model.codon
        • torchtree.evolution.substitution_model.general
        • torchtree.evolution.substitution_model.nucleotide
      • torchtree.evolution.taxa
      • torchtree.evolution.tree_height_transform
      • torchtree.evolution.tree_likelihood
      • torchtree.evolution.tree_model
      • torchtree.evolution.tree_model_flexible
      • torchtree.evolution.tree_regression
    • torchtree.inference
      • torchtree.inference.hmc
        • torchtree.inference.hmc.adaptation
        • torchtree.inference.hmc.hamiltonian
        • torchtree.inference.hmc.hmc
        • torchtree.inference.hmc.integrator
        • torchtree.inference.hmc.operator
        • torchtree.inference.hmc.stan_adaptation
      • torchtree.inference.mcmc
        • torchtree.inference.mcmc.gmrf_block_updating
        • torchtree.inference.mcmc.mcmc
        • torchtree.inference.mcmc.operator
      • torchtree.inference.sampler
      • torchtree.inference.utils
    • torchtree.nf
      • torchtree.nf.energy_functions
      • torchtree.nf.flow
      • torchtree.nf.planar
      • torchtree.nf.realnvp
    • torchtree.nn
      • torchtree.nn.module
    • torchtree.ops
      • torchtree.ops.dual_averaging
      • torchtree.ops.smooth
      • torchtree.ops.welford
    • torchtree.optim
      • torchtree.optim.convergence
      • torchtree.optim.lr_scheduler
      • torchtree.optim.optimizer
    • torchtree.torchtree
    • torchtree.typing
    • torchtree.variational
      • torchtree.variational.chi
      • torchtree.variational.kl
      • torchtree.variational.renyi
  • Bibliography

torchtree.nf

Contents

  • Submodules

torchtree.nf#

This package contains normalizing flow implementations.

Submodules#

  • torchtree.nf.energy_functions
  • torchtree.nf.flow
  • torchtree.nf.planar
  • torchtree.nf.realnvp

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Contents
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By Mathieu Fourment

© Copyright 2024, Mathieu Fourment.